SRX8769868
GSM4677031: Foxp3 ChIP-seq bulk Treg rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Foxp3

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Foxp3GFP-DTR/Y
strain
B6/Cast F1
genotype
Foxp3GFP-DTR/Y
cell type
Foxp3+ CD4 T cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Covaris TruChIP Chromatin shearing kit Kapa HTP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
64983308
Reads aligned (%)
94.4
Duplicates removed (%)
27.2
Number of peaks
6670 (qval < 1E-05)

mm9

Number of total reads
64983308
Reads aligned (%)
94.2
Duplicates removed (%)
28.0
Number of peaks
6659 (qval < 1E-05)

Base call quality data from DBCLS SRA