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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Foxp3
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
SRX8769868
GSM4677031: Foxp3 ChIP-seq bulk Treg rep1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Foxp3
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
source_name
Foxp3GFP-DTR/Y
strain
B6/Cast F1
genotype
Foxp3GFP-DTR/Y
cell type
Foxp3+ CD4 T cells
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Covaris TruChIP Chromatin shearing kit Kapa HTP
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
64983308
Reads aligned (%)
94.4
Duplicates removed (%)
27.2
Number of peaks
6670 (qval < 1E-05)
mm9
Number of total reads
64983308
Reads aligned (%)
94.2
Duplicates removed (%)
28.0
Number of peaks
6659 (qval < 1E-05)
Base call quality data from
DBCLS SRA